mirror of
https://github.com/sbrl/research-rainfallradar
synced 2024-11-25 18:33:01 +00:00
ai: start creating initial model implementation.
it's not hooked up to the CLI yet though. Focus is still on ensuring the dataset is in the right format though
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11 changed files with 328 additions and 0 deletions
85
aimodel/src/lib/ai/RainfallWaterContraster.py
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85
aimodel/src/lib/ai/RainfallWaterContraster.py
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import os
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import io
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import re
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import sys
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import json
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import tensorflow as tf
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from ..io.readfile import readfile
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from ..io.writefile import writefile
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from .model_rainfallwater_contrastive import model_rainfallwater_contrastive
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from .helpers import make_callbacks
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from .helpers import summarywriter
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from .components.LayerContrastiveEncoder import LayerContrastiveEncoder
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from .components.LayerCheeseMultipleOut import LayerCheeseMultipleOut
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from .helpers.summarywriter import summarywriter
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class RainfallWaterContraster(object):
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def __init__(self, dir_output=None, filepath_checkpoint=None, epochs=50, batch_size=64, **kwargs):
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super(RainfallWaterContraster, self).__init__()
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self.dir_output = dir_output
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self.epochs = epochs
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self.kwargs = kwargs
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self.batch_size = batch_size
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if filepath_checkpoint == None:
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self.model = self.make_model()
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if self.dir_output == None:
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raise Exception("Error: dir_output was not specified, and since no checkpoint was loaded training mode is activated.")
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if not os.path.exists(self.dir_output):
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os.mkdir(self.dir_output)
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self.filepath_summary = os.path.join(self.dir_output, "summary.txt")
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summarywriter(self.model, self.filepath_summary)
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writefile(os.path.join(self.dir_output, "params.json"), json.dumps(self.model.get_config()))
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else:
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self.model = self.load_model(filepath_checkpoint)
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@staticmethod
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def from_checkpoint(filepath_checkpoint, filepath_hyperparams):
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hyperparams = json.loads(readfile(filepath_hyperparams))
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return RainfallWaterContraster(filepath_checkpoint=filepath_checkpoint, **hyperparams)
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def make_model(self):
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model = model_rainfallwater_contrastive(batch_size=self.batch_size, **self.kwargs)
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return model
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def load_model(self, filepath_checkpoint):
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"""
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Loads a saved model from the given filename.
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filepath_checkpoint (string): The filepath to load the saved model from.
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"""
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return tf.keras.models.load_model(filepath_checkpoint, custom_objects={
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"LayerContrastiveEncoder": LayerContrastiveEncoder,
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"LayerCheeseMultipleOut": LayerCheeseMultipleOut
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})
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def train(self, dataset_train, dataset_validate):
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return self.model.fit(
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dataset_train,
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validation_data=dataset_validate,
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epochs=self.epochs,
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callbacks=make_callbacks(self.dir_output)
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)
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def embed(self, dataset):
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result = []
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i_batch = -1
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for batch in dataset:
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i_batch += 1
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result_batch = self.model(batch[0])
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# Currently, the left and right should be the same
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left, _ = tf.unstack(result_batch, axis=-2)
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result_batch = tf.unstack(left, axis=0)
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result.extend(result_batch)
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return result
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26
aimodel/src/lib/ai/components/LayerCheeseMultipleOut.py
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aimodel/src/lib/ai/components/LayerCheeseMultipleOut.py
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import tensorflow as tf
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class LayerCheeseMultipleOut(tf.keras.layers.Layer):
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def __init__(self, **kwargs):
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"""Creates a new cheese multiple out layer.
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This layer is useful if you have multiple outputs and a custom loss function that requires multiple inputs.
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Basically, it just concatenates all inputs.
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Inputs are expected to be in the form [ batch_size, feature_dim ], and this layer outputs in the form [ batch_size, concat, feature_dim ].
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This layer also creates a temperature weight for contrastive learning models.
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"""
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super(LayerCheeseMultipleOut, self).__init__(**kwargs)
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self.weights_temperature = tf.Variable(name="loss_temperature", shape=1, initial_value=tf.constant([0.07]))
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def get_config(self):
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config = super(LayerCheeseMultipleOut, self).get_config()
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return config
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def call(self, inputs):
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# inputs form: [ rainfall, water ]
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# By this point, the above has already dropped through the encoder, so should be in the form [ batch_size, dim ]
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return tf.stack(inputs, axis=-2)
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66
aimodel/src/lib/ai/components/LayerContrastiveEncoder.py
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aimodel/src/lib/ai/components/LayerContrastiveEncoder.py
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import tensorflow as tf
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from tensorflow.keras.applications.resnet_v2 import ResNet50V2
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# from transformers import TFConvNextModel, ConvNextConfig
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from ..helpers.summarywriter import summarylogger
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class LayerContrastiveEncoder(tf.keras.layers.Layer):
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def __init__(self, input_width, input_height, channels, feature_dim=200, **kwargs):
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"""Creates a new contrastive learning encoder layer.
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While this is intended for contrastive learning, this can (in theory) be used anywhere as it's just a generic wrapper layer.
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The key feature here is that it does not care about the input size or the number of channels.
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Currently it uses a ResNetV2 internally, but an upgrade to ConvNeXt is planned once Tensorflow Keras' implementation comes out of nightly and into stable.
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We would use ResNetRS (as it's technically superior), but the implementation is bad and in places outright *wrong* O.o
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Args:
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feature_dim (int, optional): The size of the features dimension in the output shape. Note that there are *two* feature dimensions outputted - one for the left, and one for the right. They will both be in the form [ batch_size, feature_dim ]. Set to a low value (e.g. 25) to be able to plot a sensible a parallel coordinates graph. Defaults to 200.
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image_width (int): The size of width of the input in pixels.
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image_height (int): The size of height of the input in pixels.
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channels (int): The number of channels in the input in pixels.
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"""
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super(LayerContrastiveEncoder, self).__init__(**kwargs)
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self.param_input_width = input_width
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self.param_input_height = input_height
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self.param_channels = channels
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self.param_feature_dim = feature_dim
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"""The main ResNet model that forms the encoder.
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Note that both the left AND the right go through the SAME encoder!s
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"""
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self.encoder = ResNet50V2(
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include_top=False,
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input_shape=(self.param_input_width, self.param_input_height, self.param_channels),
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weights=None,
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pooling=None
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)
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"""Small sequential stack of layers that control the size of the outputted feature dimension.
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"""
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self.embedding = tf.keras.layers.Dense(self.param_feature_dim)
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self.embedding_input_shape = [None, 2048] # The output shape of the above ResNet AFTER reshaping.
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summarylogger(self.encoder)
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def get_config(self):
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config = super(LayerContrastiveEncoder, self).get_config()
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config["input_width"] = self.param_input_width
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config["input_height"] = self.param_input_height
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config["input_channels"] = self.param_input_channels
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config["feature_dim"] = self.param_feature_dim
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return config
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def build(self, input_shape):
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# print("LAYER:build input_shape", input_shape)
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super().build(input_shape=input_shape[0])
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self.embedding.build(input_shape=tf.TensorShape([ *self.embedding_input_shape ]))
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def call(self, input_thing):
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result = self.encoder(input_thing)
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shape_ksize = result.shape[1]
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result = tf.nn.avg_pool(result, ksize=shape_ksize, strides=1, padding="VALID")
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target_shape = [ -1, result.shape[-1] ]
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result = self.embedding(tf.reshape(result, target_shape))
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return result
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37
aimodel/src/lib/ai/components/LossContrastive.py
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37
aimodel/src/lib/ai/components/LossContrastive.py
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import tensorflow as tf
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class LossContrastive(tf.keras.losses.Loss):
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def __init__(self, weight_temperature, batch_size):
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super(LossContrastive, self).__init__()
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self.batch_size = batch_size
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self.weight_temperature = weight_temperature
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def call(self, y_true, y_pred):
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rainfall, water = tf.unstack(y_pred, axis=-2)
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print("LOSS:call y_true", y_true.shape)
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print("LOSS:call y_pred", y_pred.shape)
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print("BEFORE_RESHAPE rainfall", rainfall)
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print("BEFORE_RESHAPE water", water)
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# # Ensure the shapes are defined
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# rainfall = tf.reshape(rainfall, [self.batch_size, rainfall.shape[1]])
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# water = tf.reshape(water, [self.batch_size, water.shape[1]])
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logits = tf.linalg.matmul(rainfall, tf.transpose(water)) * tf.clip_by_value(tf.math.exp(self.weight_temperature), 0, 100)
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print("LOGITS", logits)
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labels = tf.eye(self.batch_size, dtype=tf.int32)
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loss_rainfall = tf.keras.metrics.binary_crossentropy(labels, logits, from_logits=True, axis=0)
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loss_water = tf.keras.metrics.binary_crossentropy(labels, logits, from_logits=True, axis=1)
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loss = (loss_rainfall + loss_water) / 2
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# cosine_similarity results in tensor of range -1 - 1, but tf.sparse.eye has range 0 - 1
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print("LABELS", labels)
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print("LOSS_rainfall", loss_rainfall)
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print("LOSS_water", loss_water)
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print("LOSS", loss)
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return loss
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0
aimodel/src/lib/ai/components/__init__.py
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0
aimodel/src/lib/ai/components/__init__.py
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2
aimodel/src/lib/ai/helpers/__init__.py
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aimodel/src/lib/ai/helpers/__init__.py
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from .make_callbacks import make_callbacks
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from .summarywriter import summarywriter
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25
aimodel/src/lib/ai/helpers/make_callbacks.py
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aimodel/src/lib/ai/helpers/make_callbacks.py
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import os
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import tensorflow as tf
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def make_callbacks(dirpath):
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dirpath_checkpoints = os.path.join(dirpath, "checkpoints")
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filepath_metrics = os.path.join(dirpath, "metrics.tsv")
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if not os.path.exists(dirpath_checkpoints):
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os.mkdir(dirpath_checkpoints)
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return [
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tf.keras.callbacks.ModelCheckpoint(
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filepath=os.path.join(
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dirpath_checkpoints,
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"checkpoint_weights_e{epoch:d}_loss{loss:.3f}.hdf5"
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),
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monitor="loss"
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),
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tf.keras.callbacks.CSVLogger(
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filename=filepath_metrics,
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separator="\t"
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),
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tf.keras.callbacks.ProgbarLogger()
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]
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31
aimodel/src/lib/ai/helpers/summarywriter.py
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aimodel/src/lib/ai/helpers/summarywriter.py
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import io
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from loguru import logger
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def summarylogger(model):
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"""
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Writes the summary for a model with the default logging context.
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model (tf.keras.Model): The model to generate the summary from.
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"""
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def handle_line(line: str):
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logger.info(line)
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model.summary(print_fn=handle_line)
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def summarywriter(model, filepath_output, append=False):
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"""
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Writes the summary for a model to a file in the specified location.
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model (tf.keras.Model): The model to generate the summary from.
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filepath_output (str): The path to the file to write the summary to.
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"""
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handle = io.open(filepath_output, "a" if append else "w")
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def handle_line(line: str):
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handle.write(f"{line}\n")
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model.summary(print_fn=handle_line)
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handle.close()
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43
aimodel/src/lib/ai/model_rainfallwater_contrastive.py
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aimodel/src/lib/ai/model_rainfallwater_contrastive.py
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from pickletools import optimize
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import tensorflow as tf
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from .components.LayerContrastiveEncoder import LayerContrastiveEncoder
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from .components.LayerCheeseMultipleOut import LayerCheeseMultipleOut
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from .components.LossContrastive import LossContrastive
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def model_rainfallwater_contrastive(shape_rainfall, shape_water):
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rainfall_width, rainfall_height, rainfall_channels = shape_rainfall
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water_width, water_height, water_channels = shape_water
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input_rainfall = tf.keras.layers.Input(
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shape=shape_rainfall
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)
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input_water = tf.keras.layers.Input(
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shape=shape_water
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)
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rainfall = LayerContrastiveEncoder(
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input_width=rainfall_width,
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input_height=rainfall_height,
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channels=rainfall_channels
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)(input_rainfall)
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water = LayerContrastiveEncoder(
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input_width=water_width,
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input_height=water_height,
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channels=water_channels
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)(input_water)
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final = LayerCheeseMultipleOut()([ rainfall, water ])
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weight_temperature = final.weight_temperature
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model = tf.keras.Model(
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inputs = [ input_rainfall, input_water ],
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outputs = final
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)
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model.compile(
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optimizer="Adam",
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loss=LossContrastive(weights_temperature=weight_temperature)
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)
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7
aimodel/src/lib/io/readfile.py
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aimodel/src/lib/io/readfile.py
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import io
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def readfile(filepath):
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handle = io.open(filepath, "r")
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content = handle.read()
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handle.close()
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return content
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6
aimodel/src/lib/io/writefile.py
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aimodel/src/lib/io/writefile.py
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import io
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def writefile(filepath, content):
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handle = io.open(filepath, "w")
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handle.write(content)
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handle.close()
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