mirror of
https://github.com/sbrl/research-rainfallradar
synced 2024-11-22 09:13:01 +00:00
Lay out some basic scaffolding
I *really* hope this works. This is the 3rd major revision of this model. I've learnt a ton of stuff between now and my last attempt, so here's hoping that all goes well :D The basic idea behind this attempt is *Contrastive Learning*. If we don't get anything useful with this approach, then we can assume that it's not really possible / feasible. Something we need to watch out for is the variance (or rather lack thereof) in the dataset. We have 1.5M timesteps, but not a whole lot will be happening in most of those.... We may need to analyse the variance of the water depth data and extract a subsample that's more balanced.
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# Rainfall Radar
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> A model to predict water depth data from rainfall radar information.
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This is the 3rd major version of this model.
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## rainfallwrangler
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`rainfallwrangler` is a Node.js application to wrangle the dataset into something more appropriate for training an AI efficiently. The rainfall radar and water depth data are considered temporally to be regular time steps. Here's a diagram explaining the terminology:
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```
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NOW
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│ │ │Water depth
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│▼ Rainfall Radar Data ▼│[Offset] │▼
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├─┬─┬─┬─┬─┬─┬─┬─┬─┬─┬─┬─┼─┬─┬─┬─┬─┼─┐
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│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
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│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
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│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
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│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
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└─┴─┴─┴─┴─┴─┴─┴─┴─┴─┴─┴─┼─┴─┴─┴─┴─┴─┘
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│
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◄────────── Timesteps ─────────────►
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```
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|
"util-deprecate": {
|
||||||
|
"version": "1.0.2",
|
||||||
|
"resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz",
|
||||||
|
"integrity": "sha1-RQ1Nyfpw3nMnYvvS1KKJgUGaDM8="
|
||||||
|
},
|
||||||
|
"wkt-parser": {
|
||||||
|
"version": "1.3.2",
|
||||||
|
"resolved": "https://registry.npmjs.org/wkt-parser/-/wkt-parser-1.3.2.tgz",
|
||||||
|
"integrity": "sha512-A26BOOo7sHAagyxG7iuRhnKMO7Q3mEOiOT4oGUmohtN/Li5wameeU4S6f8vWw6NADTVKljBs8bzA8JPQgSEMVQ=="
|
||||||
|
},
|
||||||
|
"wrappy": {
|
||||||
|
"version": "1.0.2",
|
||||||
|
"resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz",
|
||||||
|
"integrity": "sha1-tSQ9jz7BqjXxNkYFvA0QNuMKtp8="
|
||||||
|
},
|
||||||
|
"xtend": {
|
||||||
|
"version": "4.0.2",
|
||||||
|
"resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.2.tgz",
|
||||||
|
"integrity": "sha512-LKYU1iAXJXUgAXn9URjiu+MWhyUXHsvfp7mcuYm9dSUKK0/CjtrUwFAxD82/mCWbtLsGjFIad0wIsod4zrTAEQ=="
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
21
rainfallwrangler/package.json
Normal file
21
rainfallwrangler/package.json
Normal file
|
|
@ -0,0 +1,21 @@
|
||||||
|
{
|
||||||
|
"name": "rainfallwrangler",
|
||||||
|
"version": "1.0.0",
|
||||||
|
"description": "Wrangles rainfall radar and water depth data into something sensible.",
|
||||||
|
"main": "src/index.mjs",
|
||||||
|
"scripts": {
|
||||||
|
"test": "echo \"No tests have been implemented yet\""
|
||||||
|
},
|
||||||
|
"repository": {
|
||||||
|
"type": "git",
|
||||||
|
"url": "https://git.starbeamrainbowlabs.com/sbrl/PhD-Rainfall-Radar.git"
|
||||||
|
},
|
||||||
|
"author": "Starbeamrainbowlabs",
|
||||||
|
"license": "GPL-3.0",
|
||||||
|
"dependencies": {
|
||||||
|
"applause-cli": "^1.8.1",
|
||||||
|
"gunzip-maybe": "^1.4.2",
|
||||||
|
"terrain50": "^1.10.1",
|
||||||
|
"tfrecord-stream": "^0.2.0"
|
||||||
|
}
|
||||||
|
}
|
||||||
63
rainfallwrangler/src/cli.mjs
Normal file
63
rainfallwrangler/src/cli.mjs
Normal file
|
|
@ -0,0 +1,63 @@
|
||||||
|
"use strict";
|
||||||
|
|
||||||
|
import path from 'path';
|
||||||
|
import fs from 'fs';
|
||||||
|
|
||||||
|
import CliParser from 'applause-cli';
|
||||||
|
|
||||||
|
import log from './lib/io/NamespacedLog.mjs'; const l = log("core");
|
||||||
|
import { LOG_LEVELS } from './lib/io/Log.mjs';
|
||||||
|
import a from './lib/io/Ansi.mjs';
|
||||||
|
|
||||||
|
import settings from './settings.mjs';
|
||||||
|
|
||||||
|
const __dirname = import.meta.url.slice(7, import.meta.url.lastIndexOf("/"));
|
||||||
|
|
||||||
|
async function load_subcommands(cli) {
|
||||||
|
let dirs = await fs.promises.readdir(path.join(__dirname, "subcommands"));
|
||||||
|
for(let dir of dirs) {
|
||||||
|
(await import(path.join(__dirname, "subcommands", dir, `meta.mjs`))).default(cli);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
export default async function () {
|
||||||
|
let cli = new CliParser(path.resolve(__dirname, "../package.json"));
|
||||||
|
cli.argument("verbose", "Enable verbose debugging output", null, "boolean")
|
||||||
|
.argument("log-level", "Sets the log level. Value values: DEBUG, INFO (the default), LOG, WARN, ERROR, NONE", "INFO", "string");
|
||||||
|
|
||||||
|
await load_subcommands(cli);
|
||||||
|
|
||||||
|
let cli_parsed = cli.parse(process.argv.slice(2));
|
||||||
|
|
||||||
|
if(cli.current_subcommand == null)
|
||||||
|
cli.write_help_exit();
|
||||||
|
|
||||||
|
Object.assign(settings, cli_parsed);
|
||||||
|
|
||||||
|
l.level = LOG_LEVELS[settings.log_level];
|
||||||
|
|
||||||
|
let subcommand_file = path.join(
|
||||||
|
__dirname,
|
||||||
|
"subcommands",
|
||||||
|
cli.current_subcommand,
|
||||||
|
`${cli.current_subcommand}.mjs`
|
||||||
|
);
|
||||||
|
|
||||||
|
if(!fs.existsSync(subcommand_file)) {
|
||||||
|
l.error(`Error: The subcommand '${cli.current_subcommand}' doesn't exist (try --help for a list of subcommands and their uses).`);
|
||||||
|
process.exit(1);
|
||||||
|
}
|
||||||
|
|
||||||
|
try {
|
||||||
|
await (await import(subcommand_file)).default();
|
||||||
|
}
|
||||||
|
catch(error) {
|
||||||
|
console.error();
|
||||||
|
if(settings.cli.verbose)
|
||||||
|
throw error;
|
||||||
|
else
|
||||||
|
console.error(`${a.fred}${a.hicol}${error.message}${a.reset}`);
|
||||||
|
process.exit(1);
|
||||||
|
throw error;
|
||||||
|
}
|
||||||
|
}
|
||||||
12
rainfallwrangler/src/index.mjs
Executable file
12
rainfallwrangler/src/index.mjs
Executable file
|
|
@ -0,0 +1,12 @@
|
||||||
|
#!/usr/bin/env node
|
||||||
|
"use strict";
|
||||||
|
|
||||||
|
|
||||||
|
import cli from './cli.mjs';
|
||||||
|
|
||||||
|
|
||||||
|
(async () => {
|
||||||
|
"use strict";
|
||||||
|
|
||||||
|
await cli();
|
||||||
|
})();
|
||||||
88
rainfallwrangler/src/lib/io/Ansi.mjs
Normal file
88
rainfallwrangler/src/lib/io/Ansi.mjs
Normal file
|
|
@ -0,0 +1,88 @@
|
||||||
|
"use strict";
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Generates various VT100 ANSI escape sequences.
|
||||||
|
* Ported from C#.
|
||||||
|
* @licence MPL-2.0 <https://www.mozilla.org/en-US/MPL/2.0/>
|
||||||
|
* @source https://gist.github.com/a4edd3204a03f4eedb79785751efb0f3#file-ansi-cs
|
||||||
|
* @author Starbeamrainbowlabs
|
||||||
|
* GitHub: @sbrl | Twitter: @SBRLabs | Reddit: u/Starbeamrainbowlabs
|
||||||
|
***** Changelog *****
|
||||||
|
* 27th March 2019:
|
||||||
|
* - Initial public release
|
||||||
|
* 9th March 2020:
|
||||||
|
* - Add Italics (\u001b[3m])
|
||||||
|
* - Export a new instance of it by default (makes it so that there's 1 global instance)
|
||||||
|
* 5th September 2020:
|
||||||
|
* - Add support for NO_COLOR environment variable <https://no-color.org/>
|
||||||
|
*/
|
||||||
|
class Ansi {
|
||||||
|
constructor() {
|
||||||
|
/**
|
||||||
|
* Whether we should *actually* emit ANSI escape codes or not.
|
||||||
|
* Useful when we want to output to a log file, for example
|
||||||
|
* @type {Boolean}
|
||||||
|
*/
|
||||||
|
this.enabled = true;
|
||||||
|
|
||||||
|
this.escape_codes();
|
||||||
|
}
|
||||||
|
|
||||||
|
escape_codes() {
|
||||||
|
if(typeof process !== "undefined" && typeof process.env.NO_COLOR == "string") {
|
||||||
|
this.enabled = false;
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
// Solution on how to output ANSI escape codes in C# from here:
|
||||||
|
// https://www.jerriepelser.com/blog/using-ansi-color-codes-in-net-console-apps
|
||||||
|
this.reset = this.enabled ? "\u001b[0m" : "";
|
||||||
|
this.hicol = this.enabled ? "\u001b[1m" : "";
|
||||||
|
this.locol = this.enabled ? "\u001b[2m" : "";
|
||||||
|
this.italics = this.enabled ? "\u001b[3m" : "";
|
||||||
|
this.underline = this.enabled ? "\u001b[4m" : "";
|
||||||
|
this.inverse = this.enabled ? "\u001b[7m" : "";
|
||||||
|
this.fblack = this.enabled ? "\u001b[30m" : "";
|
||||||
|
this.fred = this.enabled ? "\u001b[31m" : "";
|
||||||
|
this.fgreen = this.enabled ? "\u001b[32m" : "";
|
||||||
|
this.fyellow = this.enabled ? "\u001b[33m" : "";
|
||||||
|
this.fblue = this.enabled ? "\u001b[34m" : "";
|
||||||
|
this.fmagenta = this.enabled ? "\u001b[35m" : "";
|
||||||
|
this.fcyan = this.enabled ? "\u001b[36m" : "";
|
||||||
|
this.fwhite = this.enabled ? "\u001b[37m" : "";
|
||||||
|
this.bblack = this.enabled ? "\u001b[40m" : "";
|
||||||
|
this.bred = this.enabled ? "\u001b[41m" : "";
|
||||||
|
this.bgreen = this.enabled ? "\u001b[42m" : "";
|
||||||
|
this.byellow = this.enabled ? "\u001b[43m" : "";
|
||||||
|
this.bblue = this.enabled ? "\u001b[44m" : "";
|
||||||
|
this.bmagenta = this.enabled ? "\u001b[45m" : "";
|
||||||
|
this.bcyan = this.enabled ? "\u001b[46m" : "";
|
||||||
|
this.bwhite = this.enabled ? "\u001b[47m" : "";
|
||||||
|
}
|
||||||
|
|
||||||
|
// Thanks to http://ascii-table.com/ansi-escape-sequences.php for the following ANSI escape sequences
|
||||||
|
up(lines = 1) {
|
||||||
|
return this.enabled ? `\u001b[${lines}A` : "";
|
||||||
|
}
|
||||||
|
down(lines = 1) {
|
||||||
|
return this.enabled ? `\u001b[${lines}B` : "";
|
||||||
|
}
|
||||||
|
right(lines = 1) {
|
||||||
|
return this.enabled ? `\u001b[${lines}C` : "";
|
||||||
|
}
|
||||||
|
left(lines = 1) {
|
||||||
|
return this.enabled ? `\u001b[${lines}D` : "";
|
||||||
|
}
|
||||||
|
|
||||||
|
jump_to(x, y) {
|
||||||
|
return this.enabled ? `\u001b[${y};${x}H` : "";
|
||||||
|
}
|
||||||
|
|
||||||
|
cursor_pos_save() {
|
||||||
|
return this.enabled ? `\u001b[s` : "";
|
||||||
|
}
|
||||||
|
cursor_pos_restore() {
|
||||||
|
return this.enabled ? `\u001b[u` : "";
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
export default (new Ansi());
|
||||||
71
rainfallwrangler/src/lib/io/Log.mjs
Normal file
71
rainfallwrangler/src/lib/io/Log.mjs
Normal file
|
|
@ -0,0 +1,71 @@
|
||||||
|
"use strict";
|
||||||
|
|
||||||
|
import a from './Ansi.mjs';
|
||||||
|
|
||||||
|
const LOG_LEVELS = {
|
||||||
|
DEBUG: 0,
|
||||||
|
INFO: 1,
|
||||||
|
LOG: 2,
|
||||||
|
WARN: 4,
|
||||||
|
ERROR: 8,
|
||||||
|
NONE: 2048
|
||||||
|
};
|
||||||
|
|
||||||
|
class Log {
|
||||||
|
constructor() {
|
||||||
|
this.start = new Date();
|
||||||
|
|
||||||
|
this.level = LOG_LEVELS.DEBUG;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
debug(...message) {
|
||||||
|
if(this.level > LOG_LEVELS.DEBUG) return;
|
||||||
|
this.__do_log("debug", ...message);
|
||||||
|
}
|
||||||
|
|
||||||
|
info(...message) {
|
||||||
|
if(this.level > LOG_LEVELS.INFO) return;
|
||||||
|
this.__do_log("info", ...message);
|
||||||
|
}
|
||||||
|
|
||||||
|
log(...message) {
|
||||||
|
if(this.level > LOG_LEVELS.LOG) return;
|
||||||
|
this.__do_log("log", ...message);
|
||||||
|
}
|
||||||
|
|
||||||
|
warn(...message) {
|
||||||
|
if(this.level > LOG_LEVELS.WARN) return;
|
||||||
|
this.__do_log("warn", ...message);
|
||||||
|
}
|
||||||
|
|
||||||
|
error(...message) {
|
||||||
|
if(this.level > LOG_LEVELS.ERROR) return;
|
||||||
|
this.__do_log("error", ...message);
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
__do_log(level, ...message) {
|
||||||
|
message.unshift(`${a.locol}[ ${((new Date() - this.start) / 1000).toFixed(3)}]${a.reset}`);
|
||||||
|
let part = `[ ${level} ]`;
|
||||||
|
switch(level) {
|
||||||
|
case "debug":
|
||||||
|
part = a.locol + part;
|
||||||
|
break;
|
||||||
|
case "warn":
|
||||||
|
part = a.fyellow + part;
|
||||||
|
break;
|
||||||
|
case "error":
|
||||||
|
part = a.fred + part;
|
||||||
|
break;
|
||||||
|
}
|
||||||
|
message.unshift(part)
|
||||||
|
|
||||||
|
console.error(...message);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
// You won't normally need these
|
||||||
|
export { LOG_LEVELS };
|
||||||
|
|
||||||
|
export default new Log();
|
||||||
44
rainfallwrangler/src/lib/io/NamespacedLog.mjs
Normal file
44
rainfallwrangler/src/lib/io/NamespacedLog.mjs
Normal file
|
|
@ -0,0 +1,44 @@
|
||||||
|
"use strict";
|
||||||
|
|
||||||
|
import a from './Ansi.mjs';
|
||||||
|
import l from './Log.mjs';
|
||||||
|
|
||||||
|
|
||||||
|
function hash_numeric(str) {
|
||||||
|
let hash = 0;
|
||||||
|
for (let i = 0; i < str.length; i++) {
|
||||||
|
hash = ((hash << 5) - hash) + str.charCodeAt(i);
|
||||||
|
hash |= 0; // Convert to 32bit integer
|
||||||
|
}
|
||||||
|
return hash;
|
||||||
|
}
|
||||||
|
|
||||||
|
class NamespacedLog {
|
||||||
|
constructor(namespace) {
|
||||||
|
this.namespace = namespace;
|
||||||
|
|
||||||
|
// From https://github.com/debug-js/debug/blob/master/src/node.js#L35
|
||||||
|
let colours = [
|
||||||
|
20, 21, 26, 27, 32, 33, 38, 39, 40, 41, 42, 43, 44, 45, 56, 57, 62,
|
||||||
|
63, 68, 69, 74, 75, 76, 77, 78, 79, 80, 81, 92, 93, 98, 99, 112,
|
||||||
|
113, 128, 129, 134, 135, 148, 149, 160, 161, 162, 163, 164, 165,
|
||||||
|
166, 167, 168, 169, 170, 171, 172, 173, 178, 179, 184, 185, 196,
|
||||||
|
197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209,
|
||||||
|
214, 215, 220, 221
|
||||||
|
];
|
||||||
|
this.nscolour = colours[Math.abs(hash_numeric(this.namespace)) % colours.length];
|
||||||
|
let colouransi = `\u001b[3${(this.nscolour < 8 ? this.nscolour : '8;5;' + this.nscolour)}m`;
|
||||||
|
if(!a.enabled) colouransi = "";
|
||||||
|
this.ns = `${colouransi}${this.namespace}${a.reset}`;
|
||||||
|
}
|
||||||
|
|
||||||
|
debug(...msg) { l.debug(this.ns, ...msg); }
|
||||||
|
info(...msg) { l.info(this.ns, ...msg); }
|
||||||
|
log(...msg) { l.log(this.ns, ...msg); }
|
||||||
|
warn(...msg) { l.warn(this.ns, ...msg); }
|
||||||
|
error(...msg) { l.error(this.ns, ...msg); }
|
||||||
|
}
|
||||||
|
|
||||||
|
export default function(namespace) {
|
||||||
|
return new NamespacedLog(namespace);
|
||||||
|
};
|
||||||
6
rainfallwrangler/src/settings.mjs
Normal file
6
rainfallwrangler/src/settings.mjs
Normal file
|
|
@ -0,0 +1,6 @@
|
||||||
|
"use strict";
|
||||||
|
|
||||||
|
// An empty container object to store the settings in
|
||||||
|
export default {
|
||||||
|
|
||||||
|
};
|
||||||
14
rainfallwrangler/src/subcommands/tfrecordify/meta.mjs
Normal file
14
rainfallwrangler/src/subcommands/tfrecordify/meta.mjs
Normal file
|
|
@ -0,0 +1,14 @@
|
||||||
|
"use strict";
|
||||||
|
|
||||||
|
export default function(cli) {
|
||||||
|
cli.subcommand("tfrecordify", "Converts rianfall radar and water depth data to a directory of tfrecord files.")
|
||||||
|
.argument("water", "Path to the water depths file, formatted as a stream of terrain50 objects. May or may not be gzipped.", null, "string")
|
||||||
|
.argument("rainfall", "Path to the rainfall radar data, formatted as jsonl. May or may not be gzipped.", null, "string")
|
||||||
|
.argument("count-file", "The number of records to store in each TFRecord file. See the documentation for the optimal value of this number.", 64*64)
|
||||||
|
.argument("rainfall-pattern", "The pattern of the number of time steps to average, as a comma-separated list of numbers. Given a point in time, each successive number specified works BACKWARDS from that point. For example, 1,4,10 would be 3 channels: 1 time step on it's own, then average the next 4 time steps, then average the next 10 steps.", "1,3,3,5,12,24,48", function(value) {
|
||||||
|
return value.split(",")
|
||||||
|
.map(el => parseInt(el))
|
||||||
|
.reverse();
|
||||||
|
})
|
||||||
|
.argument("water-offset", "Make the water depth data be this many time steps ahead of the rainfall radar data.", 1, "integer");
|
||||||
|
}
|
||||||
14
rainfallwrangler/src/subcommands/tfrecordify/tfrecordify.mjs
Normal file
14
rainfallwrangler/src/subcommands/tfrecordify/tfrecordify.mjs
Normal file
|
|
@ -0,0 +1,14 @@
|
||||||
|
"use strict";
|
||||||
|
|
||||||
|
import settings from '../../settings.mjs';
|
||||||
|
|
||||||
|
export default async function() {
|
||||||
|
if(typeof settings.water !== "string")
|
||||||
|
throw new Error(`Error: No filepath to water depth data specified.`);
|
||||||
|
|
||||||
|
if(typeof settings.rainfall !== "string")
|
||||||
|
throw new Error(`Error: No filepath to rainfall radar data specified.`);
|
||||||
|
|
||||||
|
|
||||||
|
// TODO: Do the fanceh parsing stuff here
|
||||||
|
}
|
||||||
Loading…
Reference in a new issue