Lay out some basic scaffolding

I *really* hope this works. This is the 3rd major revision of this model. I've learnt a ton of stuff between now and my last attempt, so here's hoping that all goes well :D The basic idea behind this attempt is *Contrastive Learning*. If we don't get anything useful with this approach, then we can assume that it's not really possible / feasible. Something we need to watch out for is the variance (or rather lack thereof) in the dataset. We have 1.5M timesteps, but not a whole lot will be happening in most of those.... We may need to analyse the variance of the water depth data and extract a subsample that's more balanced.
2024-06-28 09:34:57 +00:00 · 2022-05-13 19:06:15 +01:00 · 2022-05-13 19:06:15 +01:00 · 8a9cd6c1c0
commit 8a9cd6c1c0
14 changed files with 1565 additions and 0 deletions
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+# End of https://www.toptal.com/developers/gitignore/api/python,node,git,visualstudiocode
--- a/README.md
+++ b/README.md
@ -0,0 +1,26 @@
+# Rainfall Radar
+
+> A model to predict water depth data from rainfall radar information.
+
+This is the 3rd major version of this model.
+
+
+
+
+
+## rainfallwrangler
+`rainfallwrangler` is a Node.js application to wrangle the dataset into something more appropriate for training an AI efficiently. The rainfall radar and water depth data are considered temporally to be regular time steps. Here's a diagram explaining the terminology:
+
+```
+NOW
+│                       │         │Water depth
+│▼ Rainfall Radar Data ▼│[Offset] │▼
+├─┬─┬─┬─┬─┬─┬─┬─┬─┬─┬─┬─┼─┬─┬─┬─┬─┼─┐
+│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
+│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
+│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
+│ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
+└─┴─┴─┴─┴─┴─┴─┴─┴─┴─┴─┴─┼─┴─┴─┴─┴─┴─┘
+                        │
+◄────────── Timesteps ─────────────►
+```
--- a/aimodel/src/init.py
+++ b/aimodel/src/init.py
--- a/aimodel/src/index.py
+++ b/aimodel/src/index.py
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+      "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz",
+      "integrity": "sha1-RQ1Nyfpw3nMnYvvS1KKJgUGaDM8="
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+      "resolved": "https://registry.npmjs.org/wkt-parser/-/wkt-parser-1.3.2.tgz",
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+    },
+    "wrappy": {
+      "version": "1.0.2",
+      "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz",
+      "integrity": "sha1-tSQ9jz7BqjXxNkYFvA0QNuMKtp8="
+    },
+    "xtend": {
+      "version": "4.0.2",
+      "resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.2.tgz",
+      "integrity": "sha512-LKYU1iAXJXUgAXn9URjiu+MWhyUXHsvfp7mcuYm9dSUKK0/CjtrUwFAxD82/mCWbtLsGjFIad0wIsod4zrTAEQ=="
+    }
+  }
+}
--- a/rainfallwrangler/package.json
+++ b/rainfallwrangler/package.json
@ -0,0 +1,21 @@
+{
+  "name": "rainfallwrangler",
+  "version": "1.0.0",
+  "description": "Wrangles rainfall radar and water depth data into something sensible.",
+  "main": "src/index.mjs",
+  "scripts": {
+    "test": "echo \"No tests have been implemented yet\""
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://git.starbeamrainbowlabs.com/sbrl/PhD-Rainfall-Radar.git"
+  },
+  "author": "Starbeamrainbowlabs",
+  "license": "GPL-3.0",
+  "dependencies": {
+    "applause-cli": "^1.8.1",
+    "gunzip-maybe": "^1.4.2",
+    "terrain50": "^1.10.1",
+    "tfrecord-stream": "^0.2.0"
+  }
+}
--- a/rainfallwrangler/src/cli.mjs
+++ b/rainfallwrangler/src/cli.mjs
@ -0,0 +1,63 @@
+"use strict";
+
+import path from 'path';
+import fs from 'fs';
+
+import CliParser from 'applause-cli';
+
+import log from './lib/io/NamespacedLog.mjs'; const l = log("core");
+import { LOG_LEVELS } from './lib/io/Log.mjs';
+import a from './lib/io/Ansi.mjs';
+
+import settings from './settings.mjs';
+
+const __dirname = import.meta.url.slice(7, import.meta.url.lastIndexOf("/"));
+
+async function load_subcommands(cli) {
+	let dirs = await fs.promises.readdir(path.join(__dirname, "subcommands"));
+	for(let dir of dirs) {
+		(await import(path.join(__dirname, "subcommands", dir, `meta.mjs`))).default(cli);
+	}
+}
+
+export default async function () {
+	let cli = new CliParser(path.resolve(__dirname, "../package.json"));
+	cli.argument("verbose", "Enable verbose debugging output", null, "boolean")
+		.argument("log-level", "Sets the log level. Value values: DEBUG, INFO (the default), LOG, WARN, ERROR, NONE", "INFO", "string");
+	
+	await load_subcommands(cli);
+	
+	let cli_parsed = cli.parse(process.argv.slice(2));
+	
+	if(cli.current_subcommand == null)
+		cli.write_help_exit();
+	
+	Object.assign(settings, cli_parsed);
+	
+	l.level = LOG_LEVELS[settings.log_level];
+	
+	let subcommand_file = path.join(
+		__dirname,
+		"subcommands",
+		cli.current_subcommand,
+		`${cli.current_subcommand}.mjs`
+	);
+	
+	if(!fs.existsSync(subcommand_file)) {
+		l.error(`Error: The subcommand '${cli.current_subcommand}' doesn't exist (try --help for a list of subcommands and their uses).`);
+		process.exit(1);
+	}
+	
+	try {
+		await (await import(subcommand_file)).default();
+	}
+	catch(error) {
+		console.error();
+		if(settings.cli.verbose)
+			throw error;
+		else
+			console.error(`${a.fred}${a.hicol}${error.message}${a.reset}`);
+		process.exit(1);
+		throw error;
+	}
+}
--- a/rainfallwrangler/src/index.mjs
+++ b/rainfallwrangler/src/index.mjs
@ -0,0 +1,12 @@
+#!/usr/bin/env node
+"use strict";
+
+
+import cli from './cli.mjs';
+
+
+(async () => {
+    "use strict";
+    
+    await cli();
+})();
--- a/rainfallwrangler/src/lib/io/Ansi.mjs
+++ b/rainfallwrangler/src/lib/io/Ansi.mjs
@ -0,0 +1,88 @@
+"use strict";
+
+/**
+ * Generates various VT100 ANSI escape sequences.
+ * Ported from C#.
+ * @licence MPL-2.0 <https://www.mozilla.org/en-US/MPL/2.0/>
+ * @source https://gist.github.com/a4edd3204a03f4eedb79785751efb0f3#file-ansi-cs
+ * @author Starbeamrainbowlabs
+ * GitHub: @sbrl | Twitter: @SBRLabs | Reddit: u/Starbeamrainbowlabs
+ ***** Changelog *****
+ * 27th March 2019:
+ *  - Initial public release
+ * 9th March 2020:
+ * 	- Add Italics (\u001b[3m])
+ * 	- Export a new instance of it by default (makes it so that there's 1 global instance)
+ * 5th September 2020:
+ *	- Add support for NO_COLOR environment variable <https://no-color.org/>
+ */
+class Ansi {
+	constructor() {
+		/**
+		 * Whether we should *actually* emit ANSI escape codes or not.
+		 * Useful when we want to output to a log file, for example
+		 * @type {Boolean}
+		 */
+		this.enabled = true;
+        
+		this.escape_codes();
+	}
+	
+	escape_codes() {
+		if(typeof process !== "undefined" && typeof process.env.NO_COLOR == "string") {
+			this.enabled = false;
+			return;
+		}
+		// Solution on how to output ANSI escape codes in C# from here:
+		// https://www.jerriepelser.com/blog/using-ansi-color-codes-in-net-console-apps
+		this.reset = this.enabled ? "\u001b[0m" : "";
+		this.hicol = this.enabled ? "\u001b[1m" : "";
+		this.locol = this.enabled ? "\u001b[2m" : "";
+		this.italics = this.enabled ? "\u001b[3m" : "";
+		this.underline = this.enabled ? "\u001b[4m" : "";
+		this.inverse = this.enabled ? "\u001b[7m" : "";
+		this.fblack = this.enabled ? "\u001b[30m" : "";
+		this.fred = this.enabled ? "\u001b[31m" : "";
+		this.fgreen = this.enabled ? "\u001b[32m" : "";
+		this.fyellow = this.enabled ? "\u001b[33m" : "";
+		this.fblue = this.enabled ? "\u001b[34m" : "";
+		this.fmagenta = this.enabled ? "\u001b[35m" : "";
+		this.fcyan = this.enabled ? "\u001b[36m" : "";
+		this.fwhite = this.enabled ? "\u001b[37m" : "";
+		this.bblack = this.enabled ? "\u001b[40m" : "";
+		this.bred = this.enabled ? "\u001b[41m" : "";
+		this.bgreen = this.enabled ? "\u001b[42m" : "";
+		this.byellow = this.enabled ? "\u001b[43m" : "";
+		this.bblue = this.enabled ? "\u001b[44m" : "";
+		this.bmagenta = this.enabled ? "\u001b[45m" : "";
+		this.bcyan = this.enabled ? "\u001b[46m" : "";
+		this.bwhite = this.enabled ? "\u001b[47m" : "";
+	}
+	
+	// Thanks to http://ascii-table.com/ansi-escape-sequences.php for the following ANSI escape sequences
+	up(lines = 1) {
+		return this.enabled ? `\u001b[${lines}A` : "";
+	}
+	down(lines = 1) {
+		return this.enabled ? `\u001b[${lines}B` : "";
+	}
+	right(lines = 1) {
+		return this.enabled ? `\u001b[${lines}C` : "";
+	}
+	left(lines = 1) {
+		return this.enabled ? `\u001b[${lines}D` : "";
+	}
+	
+	jump_to(x, y) {
+		return this.enabled ? `\u001b[${y};${x}H` : "";
+	}
+	
+	cursor_pos_save() {
+		return this.enabled ? `\u001b[s` : "";
+	}
+	cursor_pos_restore() {
+		return this.enabled ? `\u001b[u` : "";
+	}
+}
+
+export default (new Ansi());
--- a/rainfallwrangler/src/lib/io/Log.mjs
+++ b/rainfallwrangler/src/lib/io/Log.mjs
@ -0,0 +1,71 @@
+"use strict";
+
+import a from './Ansi.mjs';
+
+const LOG_LEVELS = {
+	DEBUG: 0,
+	INFO: 1,
+	LOG: 2,
+	WARN: 4,
+	ERROR: 8,
+	NONE: 2048
+};
+
+class Log {
+	constructor() {
+		this.start = new Date();
+		
+		this.level = LOG_LEVELS.DEBUG;
+	}
+	
+	
+	debug(...message) {
+		if(this.level > LOG_LEVELS.DEBUG) return;
+		this.__do_log("debug", ...message);
+	}
+	
+	info(...message) {
+		if(this.level > LOG_LEVELS.INFO) return;
+		this.__do_log("info", ...message);
+	}
+	
+	log(...message) {
+		if(this.level > LOG_LEVELS.LOG) return;
+		this.__do_log("log", ...message);
+	}
+	
+	warn(...message) {
+		if(this.level > LOG_LEVELS.WARN) return;
+		this.__do_log("warn", ...message);
+	}
+	
+	error(...message) {
+		if(this.level > LOG_LEVELS.ERROR) return;
+		this.__do_log("error", ...message);
+	}
+	
+	
+	__do_log(level, ...message) {
+		message.unshift(`${a.locol}[ ${((new Date() - this.start) / 1000).toFixed(3)}]${a.reset}`);
+		let part = `[ ${level} ]`;
+		switch(level) {
+			case "debug":
+				part = a.locol + part;
+				break;
+			case "warn":
+				part = a.fyellow + part;
+				break;
+			case "error":
+				part = a.fred + part;
+				break;
+		}
+		message.unshift(part)
+		
+		console.error(...message);
+	}
+}
+
+// You won't normally need these
+export { LOG_LEVELS };
+
+export default new Log();
--- a/rainfallwrangler/src/lib/io/NamespacedLog.mjs
+++ b/rainfallwrangler/src/lib/io/NamespacedLog.mjs
@ -0,0 +1,44 @@
+"use strict";
+
+import a from './Ansi.mjs';
+import l from './Log.mjs';
+
+
+function hash_numeric(str) {
+	let hash = 0;
+	for (let i = 0; i < str.length; i++) {
+		hash = ((hash << 5) - hash) + str.charCodeAt(i);
+		hash |= 0; // Convert to 32bit integer
+	}
+	return hash;
+}
+
+class NamespacedLog {
+	constructor(namespace) {
+		this.namespace = namespace;
+		
+		// From https://github.com/debug-js/debug/blob/master/src/node.js#L35
+		let colours = [
+			20, 21, 26, 27, 32, 33, 38, 39, 40, 41, 42, 43, 44, 45, 56, 57, 62,
+			63, 68, 69, 74, 75, 76, 77, 78, 79, 80, 81, 92, 93, 98, 99, 112,
+			113, 128, 129, 134, 135, 148, 149, 160, 161, 162, 163, 164, 165,
+			166, 167, 168, 169, 170, 171, 172, 173, 178, 179, 184, 185, 196,
+			197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209,
+			214, 215, 220, 221
+		];
+		this.nscolour = colours[Math.abs(hash_numeric(this.namespace)) % colours.length];
+		let colouransi = `\u001b[3${(this.nscolour < 8 ? this.nscolour : '8;5;' + this.nscolour)}m`;
+		if(!a.enabled) colouransi = "";
+		this.ns = `${colouransi}${this.namespace}${a.reset}`;
+	}
+	
+	debug(...msg)	{ l.debug(this.ns, ...msg); }
+	info(...msg)	{ l.info(this.ns, ...msg); }
+	log(...msg)		{ l.log(this.ns, ...msg); }
+	warn(...msg)	{ l.warn(this.ns, ...msg); }
+	error(...msg)	{ l.error(this.ns, ...msg); }
+}
+
+export default function(namespace) {
+	return new NamespacedLog(namespace);
+};
--- a/rainfallwrangler/src/settings.mjs
+++ b/rainfallwrangler/src/settings.mjs
@ -0,0 +1,6 @@
+"use strict";
+
+// An empty container object to store the settings in
+export default {
+	
+};
--- a/rainfallwrangler/src/subcommands/tfrecordify/meta.mjs
+++ b/rainfallwrangler/src/subcommands/tfrecordify/meta.mjs
@ -0,0 +1,14 @@
+"use strict";
+
+export default function(cli) {
+	cli.subcommand("tfrecordify", "Converts rianfall radar and water depth data to a directory of tfrecord files.")
+		.argument("water", "Path to the water depths file, formatted as a stream of terrain50 objects. May or may not be gzipped.", null, "string")
+		.argument("rainfall", "Path to the rainfall radar data, formatted as jsonl. May or may not be gzipped.",  null, "string")
+		.argument("count-file", "The number of records to store in each TFRecord file. See the documentation for the optimal value of this number.", 64*64)
+		.argument("rainfall-pattern", "The pattern of the number of time steps to average, as a comma-separated list of numbers. Given a point in time, each successive number specified works BACKWARDS from that point. For example, 1,4,10 would be 3 channels: 1 time step on it's own, then average the next 4 time steps, then average the next 10 steps.", "1,3,3,5,12,24,48", function(value) {
+			return value.split(",")
+				.map(el => parseInt(el))
+				.reverse();
+		})
+		.argument("water-offset", "Make the water depth data be this many time steps ahead of the rainfall radar data.", 1, "integer");
+}
--- a/rainfallwrangler/src/subcommands/tfrecordify/tfrecordify.mjs
+++ b/rainfallwrangler/src/subcommands/tfrecordify/tfrecordify.mjs
@ -0,0 +1,14 @@
+"use strict";
+
+import settings from '../../settings.mjs';
+
+export default async function() {
+	if(typeof settings.water !== "string")
+		throw new Error(`Error: No filepath to water depth data specified.`);
+	
+	if(typeof settings.rainfall !== "string")
+		throw new Error(`Error: No filepath to rainfall radar data specified.`);
+	
+	
+	// TODO: Do the fanceh parsing stuff here
+}