mirror of
https://github.com/sbrl/research-rainfallradar
synced 2024-06-28 17:44:55 +00:00
38 lines
991 B
Bash
Executable file
38 lines
991 B
Bash
Executable file
#!/usr/bin/env bash
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#SBATCH -J RainUniq
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#SBATCH -N 1
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#SBATCH -n 28
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#SBATCH -o %j.%N.%a.wrangle-uniq.out.log
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#SBATCH -e %j.%N.%a.wrangle-uniq.err.log
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#SBATCH -p compute
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#SBATCH --time=3-00:00:00
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module load utilities/multi
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module load readline/7.0
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module load gcc/10.2.0
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module load python/anaconda/4.6/miniconda/3.7
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# TODO: expand this to pull this dynamically from the model
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INPUT="${INPUT:-$HOME/rainfallwater_records}";
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COUNT_FILE="${COUNT_FILE:4000}"
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if [[ -z "${INPUT}" ]]; then
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echo "Error: No input directory specified in the INPUT environment variable.";
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exit 1;
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fi
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if [[ ! -d "${INPUT}" ]]; then
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echo "Error: That input directory either doesn't exist, isn't a directory, or we don't have permission to access it.";
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exit 3;
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fi
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export PATH=$HOME/software/bin:$PATH;
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echo ">>> Settings";
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echo "INPUT $INPUT";
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echo ">>> Uniquifying dataset";
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/usr/bin/env time -v src/index.mjs uniq --verbose --source "${INPUT}" --count-file "${COUNT_FILE}";
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echo ">>> exited with code $?";
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