mirror of
https://github.com/sbrl/research-rainfallradar
synced 2024-06-30 18:44:55 +00:00
47 lines
1.4 KiB
Bash
Executable file
47 lines
1.4 KiB
Bash
Executable file
#!/usr/bin/env bash
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#SBATCH -J Json2TfR
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#SBATCH -N 1
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#SBATCH -n 28
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#SBATCH -o %j.%N.%a.jsonl2tfrecord.out.log
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#SBATCH -e %j.%N.%a.jsonl2tfrecord.err.log
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#SBATCH -p compute
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#SBATCH --time=3-00:00:00
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module load utilities/multi
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module load readline/7.0
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module load gcc/10.2.0
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# module load cuda/11.5.0
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module load python/anaconda/4.6/miniconda/3.7
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INPUT="${INPUT:-$HOME/rainfallwater_records}";
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OUTPUT="${OUTPUT:-$HOME/rainfallwater_records_tfrecord}";
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if [[ -z "${INPUT}" ]]; then
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echo "Error: No input directory specified in the INPUT environment variable.";
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exit 1;
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fi
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if [[ -z "${OUTPUT}" ]]; then
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echo "Error: No output directory specified in the OUTPUT environment variable.";
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exit 1;
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fi
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if [[ ! -d "${INPUT}" ]]; then
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echo "Error: That input directory either doesn't exist, isn't a directory, or we don't have permission to access it.";
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exit 3;
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fi
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export PATH=$HOME/software/bin:$PATH;
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echo ">>> Settings";
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echo "INPUT $INPUT";
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echo ">>> Installing requirements";
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cd ../aimodel || { echo "Error: Failed to cd to ai model directory"; exit 1; };
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conda run -n py38 pip install -r requirements.txt;
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cd ../rainfallwrangler || { echo "Error: Failed to cd back to rainfallwrangler directory"; exit 1; };
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echo ">>> Converting dataset .jsonl.gz → .tfrecord.gz";
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conda run -n py38 /usr/bin/env time -v src/index.mjs jsonl2tfrecord --verbose --source "${INPUT}" --target "${OUTPUT}";
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echo ">>> exited with code $?";
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