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dlr: add dice loss as metric
more metrics to go tho
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2 changed files with 54 additions and 2 deletions
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@ -18,6 +18,7 @@ import tensorflow as tf
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from lib.dataset.dataset_mono import dataset_mono
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from lib.ai.components.LossCrossEntropyDice import LossCrossEntropyDice
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from lib.ai.components.MetricDice import MetricDice
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time_start = datetime.now()
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logger.info(f"Starting at {str(datetime.now().isoformat())}")
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@ -158,7 +159,8 @@ if PATH_CHECKPOINT is None:
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else:
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model = tf.keras.models.load_model(PATH_CHECKPOINT, custom_objects={
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# Tell Tensorflow about our custom layers so that it can deserialise models that use them
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"LossCrossEntropyDice": LossCrossEntropyDice
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"LossCrossEntropyDice": LossCrossEntropyDice,
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"MetricDice": MetricDice
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})
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@ -181,7 +183,12 @@ if PATH_CHECKPOINT is None:
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model.compile(
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optimizer=tf.keras.optimizers.Adam(learning_rate=LEARNING_RATE),
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loss=loss_fn,
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metrics=["accuracy"],
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metrics=[
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"accuracy",
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MetricDice(),
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tf.keras.metrics.MeanIoU(num_classes=2)
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# TODO: Add IoU, F1, Precision, Recall, here.
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],
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)
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logger.info(">>> Beginning training")
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history = model.fit(dataset_train,
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45
aimodel/src/lib/ai/components/MetricDice.py
Normal file
45
aimodel/src/lib/ai/components/MetricDice.py
Normal file
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@ -0,0 +1,45 @@
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import math
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import tensorflow as tf
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def dice_coefficient(y_true, y_pred):
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"""Compute the dice coefficient.
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A measure of how similar 2 things are [images], or how much they overlap [image segmentation]
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@source https://lars76.github.io/2018/09/27/loss-functions-for-segmentation.html#9
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Args:
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y_true (tf.Tensor): The ground truth label.
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y_pred (tf.Tensor): The output predicted by the model.
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Returns:
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tf.Tensor: The computed Dice coefficient.
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"""
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y_pred = tf.math.sigmoid(y_pred)
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numerator = 2 * tf.reduce_sum(y_true * y_pred)
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denominator = tf.reduce_sum(y_true + y_pred)
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return numerator / denominator
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class MetricDice(tf.keras.metrics.Metric):
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"""An implementation of the dice loss function.
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@source
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Args:
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smooth (float): The batch size (currently unused).
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"""
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def __init__(self, name="dice_coefficient", smooth=100, **kwargs):
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super(MetricDice, self).__init__(name=name, **kwargs)
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self.param_smooth = smooth
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def call(self, y_true, y_pred):
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ground_truth = tf.cast(y_true, dtype=tf.float32)
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prediction = tf.cast(y_pred, dtype=tf.float32)
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return dice_coef(ground_truth, prediction, smooth=self.param_smooth)
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def get_config(self):
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config = super(MetricDice, self).get_config()
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config.update({
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"smooth": self.param_smooth,
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})
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return config
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