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add slurm job file for uniq

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Starbeamrainbowlabs 2022-07-22 18:46:05 +01:00
parent 03e398504a
commit a593077d46
Signed by: sbrl
GPG key ID: 1BE5172E637709C2
1 changed files with 37 additions and 0 deletions
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37
rainfallwrangler/slurm-wrangle-uniq.job Executable file
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#!/usr/bin/env bash
#SBATCH -J RainUniq
#SBATCH -N 1
#SBATCH -n 28
#SBATCH -o %j.%N.%a.out
#SBATCH -e %j.%N.%a.err
#SBATCH -p compute
#SBATCH --time=3-00:00:00
module load utilities/multi
module load readline/7.0
module load gcc/10.2.0
module load python/anaconda/4.6/miniconda/3.7
# TODO: expand this to pull this dynamically from the model
INPUT="${INPUT:-$HOME/rainfallwater_records}";
COUNT_FILE="${COUNT_FILE:4000}"
if [[ -z "${INPUT}" ]]; then
echo "Error: No input directory specified in the INPUT environment variable.";
exit 1;
fi
if [[ ! -d "${INPUT}" ]]; then
echo "Error: That input directory either doesn't exist, isn't a directory, or we don't have permission to access it.";
exit 3;
fi
export PATH=$HOME/software/bin:$PATH;
echo ">>> Settings";
echo "INPUT $INPUT";
echo ">>> Uniquifying dataset";
/usr/bin/env time -v src/index.mjs --verbose --source "${INPUT}" --count-file "${COUNT_FILE}";
echo ">>> exited with code $?";