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slurm-pretrain-plot: add ARGS
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1 changed files with 2 additions and 1 deletions
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@ -24,6 +24,7 @@ show_help() {
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echo -e " INPUT The path to the input file (.jsonl.gz) containing the embedded data to plot (see the pretrain-predict subcommand for embedding data)" >&2;
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echo -e " CHECKPOINT The filepath to the checkpoint (.hdf5) file to load" >&2;
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echo -e " POSTFIX Arbitrary string to add to filename." >&2;
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echo -e " ARGS Any additional args to pass to pretrain-plot." >&2;
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echo -e "" >&2;
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echo -e "The code used to identify the run is taken automatically from the filename of the config file." >&2;
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exit;
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@ -69,7 +70,7 @@ echo ">>> Installing requirements";
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conda run -n py38 pip install -r requirements.txt;
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echo ">>> Training model";
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#shellcheck disable=SC2086
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conda run -n py38 /usr/bin/env time -v src/index.py pretrain-predict --input "${INPUT}" --output "${filepath_output}" -c "${CHECKPOINT}"
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conda run -n py38 /usr/bin/env time -v src/index.py pretrain-predict --input "${INPUT}" --output "${filepath_output}" -c "${CHECKPOINT}" ${ARGS}
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echo ">>> exited with code $?";
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INPUT="${filepath_output}" POSTFIX="${POSTFIX}" sbatch slurm-pretrain-plot.job
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