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dlr: tf graph changes
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3 changed files with 42 additions and 35 deletions
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@ -19,9 +19,9 @@ import tensorflow as tf
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from lib.dataset.dataset_mono import dataset_mono
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from lib.ai.components.LossCrossEntropyDice import LossCrossEntropyDice
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from lib.ai.components.MetricDice import metric_dice_coefficient as dice_coefficient
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from lib.ai.components.MetricSensitivity import sensitivity
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from lib.ai.components.MetricSensitivity import make_sensitivity as sensitivity
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from lib.ai.components.MetricSpecificity import specificity
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from lib.ai.components.MetricMeanIoU import one_hot_mean_iou as mean_iou
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from lib.ai.components.MetricMeanIoU import make_one_hot_mean_iou as mean_iou
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time_start = datetime.now()
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logger.info(f"Starting at {str(datetime.now().isoformat())}")
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@ -188,8 +188,8 @@ if PATH_CHECKPOINT is None:
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metrics=[
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"accuracy",
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dice_coefficient,
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mean_iou,
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sensitivity, # How many true positives were accurately predicted
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mean_iou(),
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sensitivity(), # How many true positives were accurately predicted
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specificity # How many true negatives were accurately predicted?
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# TODO: Add IoU, F1, Precision, Recall, here.
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],
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@ -3,24 +3,26 @@ import math
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import tensorflow as tf
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def one_hot_mean_iou(y_true, y_pred, classes=2):
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"""Compute the mean IoU for one-hot tensors.
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Args:
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y_true (tf.Tensor): The ground truth label.
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y_pred (tf.Tensor): The output predicted by the model.
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Returns:
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tf.Tensor: The computed mean IoU.
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"""
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print("DEBUG:meaniou y_pred.shape BEFORE", y_pred.shape)
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print("DEBUG:meaniou y_true.shape BEFORE", y_true.shape)
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y_pred = tf.math.argmax(y_pred, axis=-1)
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y_true = tf.cast(y_true, dtype=tf.float32)
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y_pred = tf.cast(y_pred, dtype=tf.float32)
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print("DEBUG:meaniou y_pred.shape AFTER", y_pred.shape)
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print("DEBUG:meaniou y_true.shape AFTER", y_true.shape)
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def make_one_hot_mean_iou():
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iou = tf.keras.metrics.MeanIoU(num_classes=classes)
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iou.update_state(y_true, y_pred)
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return iou.result()
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def one_hot_mean_iou(y_true, y_pred, classes=2):
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"""Compute the mean IoU for one-hot tensors.
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Args:
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y_true (tf.Tensor): The ground truth label.
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y_pred (tf.Tensor): The output predicted by the model.
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Returns:
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tf.Tensor: The computed mean IoU.
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"""
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print("DEBUG:meaniou y_pred.shape BEFORE", y_pred.shape)
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print("DEBUG:meaniou y_true.shape BEFORE", y_true.shape)
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y_pred = tf.math.argmax(y_pred, axis=-1)
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y_true = tf.cast(y_true, dtype=tf.float32)
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y_pred = tf.cast(y_pred, dtype=tf.float32)
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print("DEBUG:meaniou y_pred.shape AFTER", y_pred.shape)
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print("DEBUG:meaniou y_true.shape AFTER", y_true.shape)
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iou.reset_state()
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iou.update_state(y_true, y_pred)
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return iou.result()
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return one_hot_mean_iou
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@ -2,15 +2,20 @@ import math
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import tensorflow as tf
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def sensitivity(y_true, y_pred):
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print("DEBUG:sensitivity y_pred.shape BEFORE", y_pred.shape)
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print("DEBUG:sensitivity y_true.shape BEFORE", y_true.shape)
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y_pred = tf.math.argmax(y_pred, axis=-1)
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y_true = tf.cast(y_true, dtype=tf.float32)
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y_pred = tf.cast(y_pred, dtype=tf.float32)
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print("DEBUG:sensitivity y_pred.shape AFTER", y_pred.shape)
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print("DEBUG:sensitivity y_true.shape AFTER", y_true.shape)
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def make_sensitivity():
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recall = tf.keras.metrics.Recall()
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recall.update_state(y_true, y_pred)
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return recall.result()
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def sensitivity(y_true, y_pred):
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print("DEBUG:sensitivity y_pred.shape BEFORE", y_pred.shape)
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print("DEBUG:sensitivity y_true.shape BEFORE", y_true.shape)
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y_pred = tf.math.argmax(y_pred, axis=-1)
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y_true = tf.cast(y_true, dtype=tf.float32)
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y_pred = tf.cast(y_pred, dtype=tf.float32)
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print("DEBUG:sensitivity y_pred.shape AFTER", y_pred.shape)
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print("DEBUG:sensitivity y_true.shape AFTER", y_true.shape)
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recall.reset_state()
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recall.update_state(y_true, y_pred)
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return recall.result()
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return _sensitivity
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