import io import json import os import sys import argparse import re from loguru import logger import tensorflow as tf import numpy as np from lib.io.writefile import writefile from lib.io.handle_open import handle_open from lib.ai.RainfallWaterContraster import RainfallWaterContraster from lib.dataset.dataset import dataset_predict from lib.io.find_paramsjson import find_paramsjson from lib.io.readfile import readfile from lib.vis.embeddings import vis_embeddings MODE_JSONL = 1 MODE_TFRECORD = 2 def parse_args(): parser = argparse.ArgumentParser(description="Output feature maps using a given pretrained contrastive model.") # parser.add_argument("--config", "-c", help="Filepath to the TOML config file to load.", required=True) parser.add_argument("--input", "-i", help="Path to input directory containing the .tfrecord(.gz) files to predict for. If a single file is passed instead, then only that file will be converted.", required=True) parser.add_argument("--output", "-o", help="Path to output file to write output to. If the file extension .tfrecord.gz is used instead of .jsonl.gz, then a tfrecord file is written.") parser.add_argument("--records-per-file", help="Optional. If specified, this limits the number of records written to each file. When using this option, you MUST have the string '+d' (without quotes) somewhere in your output filepath.", type=int) parser.add_argument("--checkpoint", "-c", help="Checkpoint file to load model weights from.", required=True) parser.add_argument("--params", "-p", help="Optional. The file containing the model hyperparameters (usually called 'params.json'). If not specified, it's location will be determined automatically.") parser.add_argument("--reads-multiplier", help="Optional. The multiplier for the number of files we should read from at once. Defaults to 0. If using this start at a value of 1.5, which means read ceil(NUMBER_OF_CORES * 1.5). Set to a higher number of systems with high read latency to avoid starving the GPU of data. CAUTION: If this is set to greater than 0, then it will SCRAMBLE THE INPUTS!") return parser def handle_open_modeset(filepath, write_mode, handle_mode): if handle_mode == MODE_TFRECORD: options = tf.io.TFRecordOptions(compression_type="GZIP", compression_level=9) if filepath.endswith(".gz") else tf.io.TFRecordOptions() return tf.io.TFRecordWriter(filepath, options=options) else: return handle_open(filepath, write_mode) def run(args): # Note that we do NOT check to see if the checkpoint file exists, because Tensorflow/Keras requires that we pass the stem instead of the actual index file..... :-/ if (not hasattr(args, "params")) or args.params == None: args.params = find_paramsjson(args.checkpoint) if (not hasattr(args, "read_multiplier")) or args.read_multiplier == None: args.read_multiplier = 0 if (not hasattr(args, "records_per_file")) or args.records_per_file == None: args.records_per_file = 0 # 0 = unlimited if not os.path.exists(args.params): raise Exception(f"Error: The specified filepath params.json hyperparameters ('{args.params}) does not exist.") if not os.path.exists(args.checkpoint): raise Exception(f"Error: The specified filepath to the checkpoint to load ('{args.checkpoint}) does not exist.") if args.records_per_file > 0: dirpath_output=os.path.dirname(args.output) if not os.path.exists(dirpath_output): os.mkdir(dirpath_output) filepath_output = args.output if hasattr(args, "output") and args.output != None else "-" ai = RainfallWaterContraster.from_checkpoint(args.checkpoint, **json.loads(readfile(args.params))) sys.stderr.write(f"\n\n>>> This is TensorFlow {tf.__version__}\n\n\n") # Note that if using a directory of input files, the output order is NOT GUARANTEED TO BE THE SAME. In fact, it probably won't be. dataset = dataset_predict( dirpath_input=args.input, parallel_reads_multiplier=args.read_multiplier ) # for items in dataset_train.repeat(10): # print("ITEMS", len(items)) # print("LEFT", [ item.shape for item in items[0] ]) # print("ITEMS DONE") # exit(0) output_mode = MODE_TFRECORD if filepath_output.endswith(".tfrecord") or filepath_output.endswith(".tfrecord.gz") else MODE_JSONL logger.info("Output mode is "+("TFRECORD" if output_mode == MODE_TFRECORD else "JSONL")) logger.info(f"Records per file: {args.records_per_file}") write_mode = "wt" if filepath_output.endswith(".gz") else "w" if output_mode == MODE_TFRECORD: write_mode = "wb" handle = sys.stdout filepath_metadata = None if filepath_output != "-": handle = handle_open_modeset( filepath_output if args.records_per_file <= 0 else filepath_output.replace("+d", str(0)), write_mode=write_mode, handle_mode=output_mode ) filepath_metadata = os.path.join(os.path.dirname(filepath_output), "metadata.json") logger.info(f"filepath_output: {filepath_output}") logger.info(f"filepath_params: {filepath_metadata}") i = 0 i_file = i files_done = 0 for step_rainfall, step_water in ai.embed(dataset): if args.records_per_file > 0 and i_file > args.records_per_file: files_done += 1 i_file = 0 handle.close() logger.info(f"PROGRESS:file {files_done}") handle = handle_open_modeset(filepath_output.replace("+d", str(files_done+1)), write_mode, handle_mode=output_mode) if output_mode == MODE_JSONL: handle.write(json.dumps(step_rainfall.numpy().tolist(), separators=(',', ':'))+"\n") # Ref https://stackoverflow.com/a/64710892/1460422 elif output_mode == MODE_TFRECORD: if i == 0 and filepath_metadata is not None: writefile(filepath_metadata, json.dumps({ "rainfallradar": step_rainfall.shape.as_list(), "waterdepth": step_water.shape.as_list() })) step_rainfall = tf.train.BytesList(value=[tf.io.serialize_tensor(step_rainfall, name="rainfall").numpy()]) step_water = tf.train.BytesList(value=[tf.io.serialize_tensor(step_water, name="water").numpy()]) record = tf.train.Example(features=tf.train.Features(feature={ "rainfallradar": tf.train.Feature(bytes_list=step_rainfall), "waterdepth": tf.train.Feature(bytes_list=step_water) })) handle.write(record.SerializeToString()) else: raise Exception("Error: Unknown output mode.") if i == 0 or i % 100 == 0: sys.stderr.write(f"[pretrain:predict] STEP {i}\r") i += 1 i_file += 1 handle.close() sys.stderr.write("\n>>> Complete\n")