#!/usr/bin/env python3 import sys import os import seaborn as sns import matplotlib.pyplot as plt import pandas as pd def plot_metric(ax, train, val, name, dir_output): ax.plot(train, label=f"train_{name}") ax.plot(val, label=f"val_{name}") ax.set_title(name) ax.set_xlabel("epoch") ax.set_ylabel(name) # plt.savefig(os.path.join(dir_output, f"{name}.png")) # plt.close() def plot_metrics(filepath_input, dirpath_output): df = pd.read_csv(filepath_input, sep="\t") fig = plt.figure(figsize=(10,13)) for i, colname in enumerate(filter(lambda colname: colname != "epoch" and not colname.startswith("val_"), df.columns.values.tolist())): train = df[colname] val = df[f"val_{colname}"] colname_display = colname.replace("metric_dice_coefficient", "dice coefficient") \ .replace("one_hot_mean_iou", "mean iou") ax = fig.add_subplot(3, 2, i+1) plot_metric(ax, train, val, name=colname_display, dir_output=dirpath_output) fig.tight_layout() target=os.path.join(dirpath_output, f"metrics.png") plt.savefig(target) sys.stderr.write(">>> Saved to ") sys.stdout.write(target) sys.stderr.write("\n") if __name__ == "__main__": if "INPUT" not in os.environ: sys.stderr.write(""" plot_metrics.py: plot metrics for a metrics.tsv file The output file is named "metrics.png". Usage: INPUT="path/to/metrics.tsv" OUTPUT="path/to/output_dir" path/to/plot_metrics.py """) sys.exit() FILEPATH_INPUT = os.environ["INPUT"] if os.path.isdir(FILEPATH_INPUT): FILEPATH_INPUT = os.path.join(FILEPATH_INPUT, "metrics.tsv") if not os.path.exists(FILEPATH_INPUT): sys.stderr.write(f"Error: The input filepath at {FILEPATH_INPUT} either does not exist or you don't have permission to read it.\n") sys.exit(1) DIRPATH_OUTPUT = os.environ["OUTPUT"] if "OUTPUT" in os.environ else os.path.dirname(FILEPATH_INPUT) plot_metrics(FILEPATH_INPUT, DIRPATH_OUTPUT)