82 commits

Author	SHA1	Message	Date
Starbeamrainbowlabs	f94f777f0a	dlr: make cv2 import optional	2024-11-01 20:40:55 +00:00
Starbeamrainbowlabs	e908e4b693	dlr: Note about RANDSEED	2024-08-30 18:50:26 +01:00
Starbeamrainbowlabs	0761651ccf	tvt: implement CallbackExtraValidation, which allows for a third split ... it should tie into Tensorflow's logging just fine so long as it's the first callback in the queue. ***** TEST SCRIPT ***** model = tf.keras.Sequential([ tf.keras.layers.Dense(64, activation='relu', input_shape=(10,)), tf.keras.layers.Dense(64, activation='relu'), tf.keras.layers.Dense(1) ]) model.compile(optimizer='adam', loss='mse', metrics=['mae']) X = np.random.random((100, 10)) y = np.random.random((100, 1)) split = 80 X_train, X_val = X[:split], X[split:] y_train, y_val = y[:split], y[split:] train_dataset = tf.data.Dataset.from_tensor_slices((X_train, y_train)).batch(10) val_dataset = tf.data.Dataset.from_tensor_slices((X_val, y_val)).batch(10) history = model.fit(train_dataset, epochs=10, validation_data=val_dataset, callbacks=[ CallbackExtraValidation({ "test": val_dataset }, verbose=0), tf.keras.callbacks.CSVLogger("/dev/stdout", separator="\t") ], verbose=0 ) print(f"DEBUG history {history}")	2024-08-30 18:07:17 +01:00
Starbeamrainbowlabs	e5f6e6394f	Implement initial UNTESTED support for split_validation and split_test	2024-08-29 19:33:40 +01:00
Starbeamrainbowlabs	5d62e3cee8	Implement env from PhD-smflooding-scene	2024-08-29 16:43:29 +01:00
Starbeamrainbowlabs	0f9f185983	dlr: add PARALLEL_READS env var, update docs	2023-11-30 16:33:22 +00:00
Starbeamrainbowlabs	7869505cfb	dlr: add PREDICT_AS_ONE	2023-06-16 18:23:40 +01:00
Starbeamrainbowlabs	3be38823db	dlr: fix another crash	2023-05-19 22:00:23 +01:00
Starbeamrainbowlabs	3e42972fb0	dlr: add comment	2023-05-11 17:45:52 +01:00
Starbeamrainbowlabs	535bd6f579	dlr: fix crash	2023-05-07 19:00:02 +01:00
Starbeamrainbowlabs	ac040717e6	autoset the value of factor	2023-05-04 19:57:02 +01:00
Starbeamrainbowlabs	214afcc914	dlr: steps per execution is ugh	2023-05-04 19:54:51 +01:00
Starbeamrainbowlabs	f0a2e7c450	dlr: print values of new env vars	2023-05-04 19:42:40 +01:00
Starbeamrainbowlabs	8593999eb6	dlr: add JIT_COMPILE	2023-05-04 18:22:18 +01:00
Starbeamrainbowlabs	dddc08c663	dlr: set steps_per_execution to 16 by default	2023-05-04 18:13:08 +01:00
Starbeamrainbowlabs	e2e6a56b40	dlr: add UPSAMPLE env var ... ...AND actually add the functionality this time!	2023-05-04 17:40:16 +01:00
Starbeamrainbowlabs	6b17d45aad	dlr: plot all metrics	2023-03-22 17:41:34 +00:00
Starbeamrainbowlabs	e565c36149	deeplabv3+: prepare for ConvNeXt	2023-03-14 21:51:41 +00:00
Starbeamrainbowlabs	779b546897	dlr: log new env vars	2023-03-14 20:28:22 +00:00
Starbeamrainbowlabs	623208ba6d	dlr: add env var for water thresholding	2023-03-14 20:18:39 +00:00
Starbeamrainbowlabs	c5fc62c411	dlr CHANGE: Add optional log(cosh(dice_loss)) ... Ref https://doi.org/10.1109/cibcb48159.2020.9277638	2023-03-10 20:24:13 +00:00
Starbeamrainbowlabs	8e76ac2864	dlr: typo	2023-03-10 17:40:16 +00:00
Starbeamrainbowlabs	5e79825292	dlr: tf.Tensor → numpy array → list → json → disk	2023-03-10 17:34:49 +00:00
Starbeamrainbowlabs	b287970032	dlr: missing import	2023-03-10 17:31:03 +00:00
Starbeamrainbowlabs	e6cd0aa1b9	dlr: fix crash	2023-03-10 17:14:06 +00:00
Starbeamrainbowlabs	cf37aeb11a	dlr: truncate jsonl before we start to avoid mixing things up	2023-03-10 17:11:10 +00:00
Starbeamrainbowlabs	5fdf229d06	dlr: write raw outputs to jsonl file	2023-03-10 17:07:44 +00:00
Starbeamrainbowlabs	d24381babb	dlr: make size fo prediction graph actually sensible	2023-03-09 19:54:27 +00:00
Starbeamrainbowlabs	8d932757b5	dlr: variable name typo	2023-03-09 19:44:39 +00:00
Starbeamrainbowlabs	b6ca885fe2	dlr: told you so	2023-03-09 19:43:35 +00:00
Starbeamrainbowlabs	f9df19cfd5	dlr: next of several typos	2023-03-09 19:34:45 +00:00
Starbeamrainbowlabs	96eae636ea	dir: add missing functions to .load() custom objs ... apparently metrics are also required to be included here...	2023-03-09 19:26:57 +00:00
Starbeamrainbowlabs	ad52ae9241	dir: also plot inputs	2023-03-09 19:13:25 +00:00
Starbeamrainbowlabs	436ab78438	dlr: when predicting, also display heatmap ... ...of positive predictions	2023-03-09 18:54:28 +00:00
Starbeamrainbowlabs	0734201107	dlr: tf graph changes	2023-03-03 22:44:49 +00:00
Starbeamrainbowlabs	e9dcbe3863	dlr: fixup	2023-03-03 22:09:05 +00:00
Starbeamrainbowlabs	5c6789bf40	meaniou: implement one-hot version ... it expects sparse, but our output is one-hot.	2023-03-03 22:04:21 +00:00
Starbeamrainbowlabs	3d051a8874	dlr: HACK: argmax to convert [64,128,128, 2] → [64,128,128]	2023-03-03 21:41:26 +00:00
Starbeamrainbowlabs	94a32e7144	dlr: fix metrics	2023-03-03 20:37:22 +00:00
Starbeamrainbowlabs	c7f96ab6ab	dlr: typo	2023-03-03 20:23:03 +00:00
Starbeamrainbowlabs	06f956dc07	dlr: default LOSS, EPOCHS, and PREDICT_COUNT to better values ... Ref recent experiments	2023-03-03 20:17:08 +00:00
Starbeamrainbowlabs	b435cc54dd	dlr: add sensitivity (aka recall) and specificity metrics	2023-03-03 20:00:05 +00:00
Starbeamrainbowlabs	d464c9f57d	dlr: add dice loss as metric ... more metrics to go tho	2023-03-03 19:34:55 +00:00
Starbeamrainbowlabs	f70083bea4	dlr eo: set custom_objects when loading model	2023-03-01 17:19:10 +00:00
Starbeamrainbowlabs	4fd9feba4f	dlr eo: tidyup	2023-03-01 16:47:36 +00:00
Starbeamrainbowlabs	69b5ae8838	dlr eo: this should fix it	2023-02-23 17:24:30 +00:00
Starbeamrainbowlabs	9f1cee2927	dlr eo: cheese it by upsampling and then downsampling again	2023-02-23 16:47:00 +00:00
Starbeamrainbowlabs	7bcf13f8d8	dlr: typo	2023-01-16 18:02:09 +00:00
Starbeamrainbowlabs	0b31c9e700	log start time, end time, and elapsed ... just in case...!	2023-01-16 17:30:20 +00:00
Starbeamrainbowlabs	82e01da70b	fixup.... again ... oops	2023-01-13 18:47:29 +00:00