From df12470e780ca08ff53b096908a71a45fed5e531 Mon Sep 17 00:00:00 2001 From: Starbeamrainbowlabs Date: Wed, 21 Sep 2022 14:40:28 +0100 Subject: [PATCH] flip conda and time hopefully we can capture the exit code this way --- aimodel/slurm-pretrain-plot.job | 2 +- aimodel/slurm-pretrain-predict.job | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/aimodel/slurm-pretrain-plot.job b/aimodel/slurm-pretrain-plot.job index 1d0c6e9..197f33b 100755 --- a/aimodel/slurm-pretrain-plot.job +++ b/aimodel/slurm-pretrain-plot.job @@ -62,6 +62,6 @@ echo ">>> Installing requirements"; conda run -n py38 pip install -r requirements.txt; echo ">>> Training model"; #shellcheck disable=SC2086 -/usr/bin/env time -v conda run -n py38 src/index.py pretrain-plot -i "${INPUT}" -o "${filepath_output}" ${ARGS}; +conda run -n py38 /usr/bin/env time -v src/index.py pretrain-plot -i "${INPUT}" -o "${filepath_output}" ${ARGS}; # src/index.py pretrain --input "${INPUT}" --output "${dir_output}" ${ARGS}; echo ">>> exited with code $?"; diff --git a/aimodel/slurm-pretrain-predict.job b/aimodel/slurm-pretrain-predict.job index 22f2d04..1ee7d23 100755 --- a/aimodel/slurm-pretrain-predict.job +++ b/aimodel/slurm-pretrain-predict.job @@ -69,7 +69,7 @@ echo ">>> Installing requirements"; conda run -n py38 pip install -r requirements.txt; echo ">>> Training model"; #shellcheck disable=SC2086 -/usr/bin/env time -v conda run -n py38 src/index.py pretrain-predict --input "${INPUT}" --output "${filepath_output}" -c "${CHECKPOINT}" +conda run -n py38 /usr/bin/env time -v src/index.py pretrain-predict --input "${INPUT}" --output "${filepath_output}" -c "${CHECKPOINT}" echo ">>> exited with code $?"; INPUT="${filepath_output}" POSTFIX="${POSTFIX}" sbatch slurm-pretrain-plot.job