research-rainfallradar/rainfallwrangler/slurm-jsonl2tfrecord.job

#!/usr/bin/env bash
#SBATCH -J Json2TfR
#SBATCH -N 1
#SBATCH -n 28
#SBATCH -o %j.%N.%a.out
#SBATCH -e %j.%N.%a.err
#SBATCH -p compute
#SBATCH --time=3-00:00:00

module load utilities/multi
module load readline/7.0
module load gcc/10.2.0

# module load cuda/11.5.0

module load python/anaconda/4.6/miniconda/3.7

INPUT="${INPUT:-$HOME/rainfallwater_records}";
OUTPUT="${OUTPUT:-$HOME/rainfallwater_records_tfrecord}";

if [[ -z "${INPUT}" ]]; then
	echo "Error: No input directory specified in the INPUT environment variable.";
	exit 1;
fi
if [[ -z "${OUTPUT}" ]]; then
	echo "Error: No output directory specified in the OUTPUT environment variable.";
	exit 1;
fi
if [[ ! -d "${INPUT}" ]]; then
	echo "Error: That input directory either doesn't exist, isn't a directory, or we don't have permission to access it.";
	exit 3;
fi

export PATH=$HOME/software/bin:$PATH;

echo ">>> Settings";

echo "INPUT $INPUT";

echo ">>> Installing requirements";
cd ../aimodel || { echo "Error: Failed to cd to ai model directory"; exit 1; };
conda run -n py38 pip install -r requirements.txt;
cd ../rainfallwrangler || { echo "Error: Failed to cd back to rainfallwrangler directory"; exit 1; };
echo ">>> Converting dataset .jsonl.gz → .tfrecord.gz";
conda run -n py38 /usr/bin/env time -v src/index.mjs jsonl2tfrecord --verbose --source "${INPUT}" --target "${OUTPUT}";
echo ">>> exited with code $?";